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Research & Publications

Dr. Medina Picture

Coral reef at the Caribbean
Diagram of the Cassiopea Xamachana life cycle.
Coral polyps.

Diagram of the cycle of the Holobiont.

Graph of the Speciation in Corals.

TittleAuthorsYear
2025
Future of coral bleaching researchAG Grottoli, AM Hulver, RV Thurber, RJ Toonen, ER Schmeltzer, …
BioScience, biaf066
2025
Scientific diasporas can accelerate the implementation of global biodiversity goalsJ Prieto, N Ocampo-Peรฑuela, F Zapata, M Medina
Nature Reviews Biodiversity, 1-3
2025
Cassiopea xamachana polyp feeding under husbandry conditions
V Sharp, K Pfeil, K Kitch, M Medina
microPublication Biology 2025, 10.17912/micropub. biology. 00156
2025
Endozoicomonas dominance and Vibrionaceae stability underpin resilience in urban coral Madracis auretenraJ Ruiz-Toquica, AF Herrera, M Medina
PeerJ 13, e19226 2025
2025
Cassiopea xamachana microbiome across anatomy, development, and geographyAH Kerwin, A Ohdera, J Bier, D Goodman, M Mammone, V Sharp, …
PloS one 20 (4), e0319944
2025
Protect US racial affinity groupsVB Chaudhary, S Kim, M Medina, DS Srivastava, N Traylor-Knowles, …
Science 387 (6737), 937-937
2025
Metatranscriptomics sheds light on โ€œwho is doing whatโ€ in the coralK Tandon, J Hu, F Ricci, LL Blackall, M Medina, M Kรผhl, H Verbruggen
bioRxiv, 2025.01. 09.632055
2025
Evidence for microbially-mediated tradeoffs between growth and defense throughout coral evolutionHE Epstein, T Brown, AO Akinrinade, R McMinds, FJ Pollock, D Sonett, …
Animal Microbiome 7 (1), 1
2025
2024
The Potential of CCA-associated Bacteria to Fight Antimicrobial-Resistant Pathogens: a Genomic SurveyD Lera-Lozano, JS Ruiz-Toquica, MW Holt, EK Jones, KB Ritchie, …
bioRxiv, 2024.11. 26.625565
2024
The disciplinary matrix of holobiont biologySR Bordenstein, The Holobiont Biology Network
Science 386 (6723), 731-732
2024
A paleogenomic approach to reconstruct historical responses of coral reefs to anthropogenic changeRA Gonzรกlez-Pech, C Howe, LD Lizcano-Sandoval, …
BioRxiv, 2024.09. 02.610915
2024
Reassessing the role of herbivores on urban coral reefs: A case study from a heavily impacted reef near Cartagena Bay, ColombiaAA Shantz, T Lรณpez-Londoรฑo, K Gomez-Campo, R Iglesias-Prieto, …
Urban Ecosystems 27 (3), 689-697
2024
Speciation across depth gradients in reef coralsC Prada, M Gรณmez-Corrales, A Gonzaฬlez, B Kamel, M Medina, .2024
Hostโ€“symbiont plasticity in the upside-down jellyfishV Sharp, AH Kerwin, M Mammone, V Avila-Magana, K Turnham, …
Frontiers in Ecology and Evolution 12, 1333028
2024
Coral Cryptic Lineages Segregate across a Depth Cline in the CaribbeanM Gomez-Corrales, M Medina, AM Gonzalez, N Knowlton, DR Levitan, …
American Geophysical Union, Ocean Sciences Meeting, ME43A-05
2024
The evolution, assembly, and dynamics of marine holobiontsRA Gonzรกlez-Pech, VY Li, V Garcia, E Boville, M Mammone, H Kitano, …
Annual Review of Marine Science 16 (1), 443-466
2024
2023
A meta-analysis of the stony coral tissue loss disease microbiome finds key bacteria in unaffected and lesion tissue in diseased coloniesSM Rosales, LK Huebner, JS Evans, A Apprill, AC Baker, CC Becker, …
ISME communications 3 (1), 19
2023
Unraveling the functional dark matter through global metagenomicsGA Pavlopoulos, FA Baltoumas, S Liu, O Selvitopi, AP Camargo, …
Nature 622 (7983), 594-602
2023
Exploring the status of an urban coral and the presence of potential probiotic traits in culturable bacteriaJS Ruiz-Toquica, LA Yaรฑez-Dukon, C Herrera Khenayzir, I Romero Borja, …
Journal of Marine Science and Engineering 11 (10), 2006
2023
Differing lesion recovery rates of two Caribbean stony coral species across a shallow water to mesophotic depth gradient suggest different sensitivity to repeated disturbanceJE Townsend, ME Brandt, S Mukherjee, M Medina, TB Smith
Coral Reefs 42 (5), 1067-1077
2023
Navigating learning ecosystems: Exploring studentsโ€™ use of agency in marine and environmental sciencesK Martin, J Robertson Evia, K Peterman, K Grimes, M Medina, M Brandt
Journal of Geoscience education 71 (3), 415-427
2023
Comparative Genomic Insights into Bacterial Induction of Larval Settlement and Metamorphosis in the Upside-Down Jellyfish A Ohdera, K Attarwala, V Wu, R Henry, H Laird, DK Hofmann, WK Fitt, …
Msphere 8 (3), e00315-22
2023
Sobrevivencia y respuestas fisiolรณgicas de corales expuestos a elevada turbidez en el arrecife Varadero, Caribe colombianoT Lรณpez-Londoรฑo, K Gรณmez-Campo, CT Galindo-Martรญnez, …
Boletรญn de Investigaciones Marinas y Costeras 52 (1), 135-158
2023
Survival and physiological responses of corals exposed to elevated turbidity in the Varadero reef, Colombian CaribbeanT Lรณpez-Londoรฑo, K Gรณmez-Campo, CT Galindo-Martรญnez, …
Boletรญn de Investigaciones Marinas y Costeras-INVEMAR 52 (1), 135-158
2023
The influence of photosymbiosis in M Mammone, V Sharp, M Hewitt, M Medina
Symbiosis 90 (1), 61-70
2023
Anatomically-specific coupling between innate immune gene repertoire and microbiome structure during coral evolutionT Brown, D Sonett, R McMinds, FJ Pollock, M Medina, JR Zaneveld
bioRxiv, 2023.04. 26.538298
2023
A metagenomic-based study of two sites from the Barbadian reef systemS Simpson, V Bettauer, A Ramachandran, S Kraemer, S Mahon, …
Coral Reefs 42 (2), 359-366
2023
Every refuge has its price: Ostreobium as a model for understanding how algae can live in rock and stay in businessK Tandon, MM Pasella, C Iha, F Ricci, J Hu, CJ Oโ€™Kelly, M Medina, M Kรผhl, …
Seminars in cell & developmental biology 134, 27-36
2023
Collaborative Research: MUCUS: Measuring and Understanding the Cassiopea Use of SpaceM Medina
NSF Award Number 2227070. Directorate for Biological Sciences 22 (2227070 โ€ฆ
2023
Genomic view of the diversity and functional role of archaea and bacteria in the skeleton of the reef-building corals K Tandon, F Ricci, J Costa, M Medina, M Kรผhl, LL Blackall, H Verbruggen
GigaScience 12, giac127
2023
2022
Harnessing the power of model organisms to unravel microbial functions in the coral holobiontG Puntin, M Sweet, S Fraune, M Medina, K Sharp, VM Weis, M Ziegler
Microbiology and Molecular Biology Reviews 86 (4), e00053-22
2022
Unified methods in collecting, preserving, and archiving coral bleaching and restoration specimens to increase sample utility and interdisciplinary collaborationRV Thurber, ER Schmeltzer, AG Grottoli, R van Woesik, RJ Toonen, …
PeerJ 10, e14176
2022
Expansion of the global RNA virome reveals diverse clades of bacteriophages
U Neri, YI Wolf, S Roux, AP Camargo, B Lee, D Kazlauskas, IM Chen, …
Cell 185 (21), 4023-4037. e18
2022
Advances in coral immunity โ€˜omics in response to disease outbreaksN Traylor-Knowles, AC Baker, KM Beavers, N Garg, JR Guyon, …
Frontiers in Marine Science 9, 952199
2022
A meta-analysis of the stony coral tissue loss disease microbiome finds key bacteria in lesions and unaffected tissue of diseased coloniesSM Rosales, LK Huebner, JS Evans, A Apprill, AC Baker, AJ Bellantuono, …
bioRxiv, 2022.09. 30.510359
2022
Thermal Stress Has Minimal EffectsEM Dรญaz-Almeyda, T Ryba, AH Ohdera, SM Collins, N Shafer, C Link, …
Variance Matters: Individual Differences and Their Consequences for Natural โ€ฆ
2022
Symbiosis-driven development in an early branching metazoanAH Ohdera, V Avila-Magaรฑa, V Sharp, K Watson, M McCauley, …
bioRxiv, 2022.07. 21.500558
2022
Thousands of small, novel genes predicted in global phage genomesBJ Fremin, AS Bhatt, NC Kyrpides, A Sengupta, A Sczyrba, AM da Silva, …
Cell Reports 39 (12)
2022
Thermal Stress Has Minimal Effects on Bacterial Communities of Thermotolerant EM Dรญaz-Almeyda, T Ryba, AH Ohdera, SM Collins, N Shafer, C Link, …
Frontiers in Ecology and Evolution 10, 764086
2022
Linking photoacclimation responses and microbiome shifts between depth-segregated sibling species of reef coralsC Prada, T Lรณpez-Londoรฑo, FJ Pollock, S Roitman, KB Ritchie, …
Royal Society Open Science 9 (3), 211591
2022
Declining Importance of Herbivores in Structuring a Heavily Impacted Urban Coral Reef near Cartagena Bay, ColombiaA Shantz, T Lรณpez-Londoรฑo, K Gomez-Campo, R Iglesias-Prieto, …2022
The role of the endolithic alga CT Galindo-Martรญnez, M Weber, V Avila-Magaรฑa, S Enrรญquez, H Kitano, …
Scientific Reports 12 (1), 2977
2022
A five-fold expansion of the global RNA virome reveals multiple new clades of RNA bacteriophagesU Neri, YI Wolf, S Roux, AP Camargo, B Lee, D Kazlauskas, IM Chen, …
BioRxiv, 2022.02. 15.480533
2022
Grand challenges in coevolution “M Medina, DM Baker, DA Baltrus, GM Bennett, U Cardini, AMS Correa, …
Frontiers in Ecology and Evolution 9, 618251″
2022
2021
The upside-down jellyfish Cassiopea xamachana as an emerging model system to study cnidarianโ€“algal symbiosisM Medina, V Sharp, A Ohdera, A Bellantuono, J Dalrymple, …
Handbook of marine model organisms in experimental biology, 149-171
2021
Ectohydrolytic enzyme activities of bacteria associated with Orbicella annularis coralY Zhou, R Guillemette, F Malfatti, T Zheng, X Mao, X Zhu, M Medina, …
Coral Reefs 40 (6), 1899-1913
2021
Elucidating gene expression adaptation of phylogenetically divergent coral holobionts under heat stressV Avila-Magaรฑa, B Kamel, M DeSalvo, K Gรณmez-Campo, S Enrรญquez, …
Nature Communications 12 (1), 5731
2021
Physiological and ecological consequences of the water optical properties degradation on reef coralsT Lรณpez-Londoรฑo, CT Galindo-Martรญnez, K Gรณmez-Campo, …
Coral Reefs 40 (4), 1243-1256
2021
Insights into the cultured bacterial fraction of coralsM Sweet, H Villela, T Keller-Costa, R Costa, S Romano, DG Bourne, …
Msystems 6 (3), 10.1128/msystems. 01249-20
2021
Symbiotic associations of the deepest recorded photosynthetic scleractinian coral (172 m depth)H Rouzรฉ, PE Galand, M Medina, P Bongaerts, M Pichon, …
The ISME journal 15 (5), 1564-1568
2021
Genomic adaptations to an endolithic lifestyle in the coral-associated alga OstreobiumC Iha, KE Dougan, JA Varela, V Avila, CJ Jackson, KA Bogaert, Y Chen, …
Current Biology 31 (7), 1393-1402. e5
2021
A genomic catalog of Earthโ€™s microbiomesS Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, …
Nature biotechnology 39 (4), 499-509
2021
Mussismilia braziliensis White Plague Disease Is Characterized by an Affected Coral Immune System and DysbiosisAW Silva-Lima, AM Froes, GD Garcia, LAC Tonon, J Swings, …
Microbial ecology 81 (3), 795-806
2021
Comparative genomics reveals differences between coral-associated and free-living bacteriaJM Pac, D Maranto, M Medina, AH Kerwin
INTEGRATIVE AND COMPARATIVE BIOLOGY 61, E678-E679
2021
A community perspective on the concept of marine holobionts: current status, challenges, and future directionsSM Dittami, E Arboleda, JC Auguet, A Bigalke, E Briand, P Cรกrdenas, …
PeerJ 9, e10911
2021
2020
Coral evolutionary responses to microbial symbiosesMJH Van Oppen, M Medina
Philosophical Transactions of the Royal Society B 375 (1808), 20190591
2020
Comparative animal mucomics: Inspiration for functional materials from ubiquitous and understudied biopolymersAR Cerullo, TY Lai, B Allam, A Baer, WJP Barnes, Z Barrientos, …
ACS Biomaterials Science & Engineering 6 (10), 5377-5398
2020
Surviving marginalized reefs: assessing the implications of the microbiome on coral physiology and survivorshipS Roitman, T Lรณpez-Londoรฑo, F Joseph Pollock, KB Ritchie, …
Coral Reefs 39 (3), 795-807
2020
Alterations in transcriptional and developmental regulation: Evolutionary implication of symbiosis in Cassiopea xamachanaAH Ohdera, V Sharp, K Watson, B Steinworth, E Diaz-Almeyda, AZ Poole, …
INTEGRATIVE AND COMPARATIVE BIOLOGY 60, E176-E17
2020
Insights on the genetic repertoire of the coral AW Silva Lima, L Leomil, L Oliveira, T Varasteh, JR Thompson, M Medina, …
Symbiosis 80 (2), 183-193
2020
2019
Coral Microbiomes as Bioindicators of ReefS Roitman, FJ Pollock, M Medina
Population Genomics: Marine Organisms, 39
2019
Beneath the surface: community assembly and functions of the coral skeleton microbiomeF Ricci, V Rossetto Marcelino, LL Blackall, M Kรผhl, M Medina, …
Microbiome 7 (1), 159
2019
Youth Ocean Explorers: A pathway to diversifying the field of marine scienceH Forbes Jr, J Stout, KW Grimes, ME Brandt, N Jones, CJ Bucklin, …
2019 CERF Biennial Conference
2019
A Pathway and Partnership Program to Engage US Virgin Islanders in the Marine SciencesKKW Grimes, ME Brandt, M Medina, CJ Bucklin, N Jones, H Forbes Jr, …
2019 CERF Biennial Conference
2019
Supporting Emerging Aquatic Scientists (SEAS) Your Tomorrow: Bridge to Ph. D. Program and Marine Science OpportunitiesK Schlender, KW Grimes, ME Brandt, M Medina, CJ Bucklin, N Jones
2019 CERF Biennial Conference
2019
NSF INCLUDES: Supporting Emerging Aquatic Scientists (SEAS) Islands AllianceM Medina
NSF Award Number 1930910. Directorate for STEM Education 19 (1930910), 30910
2019
Box, stalked, and upside-down? Draft genomes from diverse jellyfish (Cnidaria, Acraspeda) lineages: A Ohdera, CL Ames, RB Dikow, E Kayal, M Chiodin, B Busby, S La, …
GigaScience 8 (7), giz069
2019
Multiple facets of marine invertebrate conservation genomicsJV Lopez, B Kamel, M Medina, T Collins, IB Baums
Annual review of animal biosciences 7 (1), 473-497
2019
Acquisition of obligate mutualist symbionts during the larval stage is not beneficial for a coral hostAC Hartmann, KL Marhaver, A Klueter, MT Lovci, CJ Closek, E Diaz, …
Molecular Ecology 28 (1), 141-155
2019
2018
Coral-associated bacteria demonstrate phylosymbiosis and cophylogenyCoral-associated bacteria demonstrate phylosymbiosis and cophylogeny2018
Coral-associated bacteria demonstrate phylosymbiosis and cophylogenyCoral-associated bacteria demonstrate phylosymbiosis and cophylogeny2018
Intra-and interspecific variation and phenotypic plasticity in thylakoid membrane properties across two Symbiodinium cladesIntra-and interspecific variation and phenotypic plasticity in thylakoid membrane properties across two Symbiodinium clades2018
Bacterioplankton drawdown of coral mass-spawned organic matterBacterioplankton drawdown of coral mass-spawned organic matter2018
The Global Coral Microbiome Project-AustraliaThe Global Coral Microbiome Project-Australia2018
Ecological speciation in coralsEcological speciation in corals2018
Coral microbiomes as bioindicators of reef healthCoral microbiomes as bioindicators of reef health2018
Phylogenomics provides a robust topology of the major cnidarian lineages and insights on the origins of key organismal traitsPhylogenomics provides a robust topology of the major cnidarian lineages and insights on the origins of key organismal traits2018
Upside-Down but Headed in the Right Direction: Review of the Highly Versatile Upside-Down but Headed in the Right Direction: Review of the Highly Versatile 2018
Symbiodinium proliferation inside a cnidarian host vessel are competitive and dynamicSymbiodinium proliferation inside a cnidarian host vessel are competitive and dynamic2018
Comparative Metatranscriptomics of Coral BleachingComparative Metatranscriptomics of Coral Bleaching2018
Gene expression of settled and metamorphosed Orbicella faveolata during establishment of symbiosisGene expression of settled and metamorphosed Orbicella faveolata during establishment of symbiosis2018
2017
Unraveling the structure and composition of Varadero Reef, an improbable and imperiled coral reef in the Colombian CaribbeanV Pizarro, SC Rodrรญguez, M Lรณpez-Victoria, FA Zapata, S Zea, …
PeerJ 5, e4119
2017
Intraspecific and interspecific variation in thermotolerance and photoacclimation in EM Dรญaz-Almeyda, C Prada, AH Ohdera, H Moran, DJ Civitello, …
Proceedings of the Royal Society B: Biological Sciences 284 (1868), 20171767
2017
A communal catalogue reveals Earthโ€™s multiscale microbial diversityLR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, …
Nature 551 (7681), 457-463
2017
Supporting Emerging Aquatic Scientists (SEAS) Your Tomorrow: Engaging US Virgin Islanders in the Marine SciencesKW Grimes, ME Brandt, CJ Bucklin, N Jones, M Medina
24th Biennial CERF Conference
2017
Population structure and connectivity of the mountainous star coral, JP Rippe, MV Matz, EA Green, M Medina, NZ Khawaja, T Pongwarin, …
Ecology and evolution 7 (22), 9234-9246
2017
Comprehensive phylogenomic analyses resolve cnidarian relationships and the origins of key organismal traits\E Kayal, B Bastian, MS Pankey, A Ohdera, M Medina, DC Plachetzki, …
PeerJ Preprints
2017
Unraveling a resilient reef: structure and composition of Varadero, an imperiled coral reef in the Colombian Caribbean\V Pizarro, SC Rodrรญguez, M Lรณpez-Victoria, FA Zapata, S Zea, …
PeerJ Preprints
2017
Whole genome analysis of a schistosomiasis-transmitting freshwater snailCM Adema, LDW Hillier, CS Jones, ES Loker, M Knight, P Minx, …
Nature communications 8 (1), 15451
2017
Crown-of-thorns no moreM Medina
Nature 544 (7649), 169-170
2017
You gain some, you lose some: Hox genes in the early history of Cnidaria and Bilateria\M Chiodin, E Kayal, A Ohdera, M Medina, DC Plachetski, AG Collins, …
INTEGRATIVE AND COMPARATIVE BIOLOGY 57, E224-E224
2017
2016
Empty niches after extinctions increase population sizes of modern coralsC Prada, B Hanna, AF Budd, CM Woodley, J Schmutz, J Grimwood, …
Current Biology 26 (23), 3190-3194
2016
Collaborative Research: NSF INCLUDES-Changing the Face of STEM in the US Virgin Islands through Targeted Interventions to Expand Opportunities and Broaden ParticipationM Medina
NSF Award Number 1649184. Directorate for STEM Education 16 (1649184), 49184
2016
Nearโ€future pH conditions severely impact calcification, metabolism and the nervous system in the pteropod A Moya, EL Howes, T Lacoueโ€Labarthe, S Forรชt, B Hanna, M Medina, …
Global Change Biology 22 (12), 3888-3900
2016
BioMine-DB: A database for metazoan biomineralization proteinsBS Kamel, CR Voolstra, M Medina
PeerJ Preprints 4, e1983v2
2016
Recent advances in symbiosis research: Integrative approachesMP Francino, M Medina
Frontiers in Microbiology 7, 1331
2016
RAPID: Coral robustness: lessons from an” improbable” reefM Medina
NSF Award Number 1642311. Directorate for Geosciences 16 (1642311), 42311
2016
Comparative genomics explains the evolutionary success of reef-forming coralsD Bhattacharya, S Agrawal, M Aranda, S Baumgarten, M Belcaid, …
elife 5, e13288
2016
BioMine: A database for metazoan biomineralization proteinsBS Hanna, CR Voolstra, M Medina2016
Big Data Approaches To Coral-Microbe SymbiosisJ Zaneveld, FJ Pollock, R McMinds, S Smith, JP Payet, B Hanna, R Welsh, …
American Geophysical Union, Ocean Sciences Meeting, ME14C-0628
2016
2015
Functional Characterization of Cnidarian HCN Channels Points to an Early Evolution of IhEC EC Baker, MJ Layden, DB Van Rossum, B Kamel, M Medina, E Simpson, …
PloS one 10 (11), e0142730
2015
Whole transcriptome analysis reveals changes in expression of immune-related genes during and after bleaching in a reef-building coralJH Pinzรณn, B Kamel, CA Burge, CD Harvell, M Medina, E Weil, …
Royal Society open science 2 (4), 140214
2015
Reproductive natural history and successful juvenile propagation of the threatened Caribbean Pillar Coral KL Marhaver, MJA Vermeij, MM Medina
BMC ecology 15 (1), 9
2015
Major diversification of voltage-gated K+ channels occurred in ancestral parahoxozoansX Li, H Liu, J Chu Luo, SA Rhodes, LM Trigg, DB Van Rossum, A Anishkin, …
Proceedings of the National Academy of Sciences 112 (9), E1010-E101
2015
Microbes in the coral holobiont: partners through evolution, development, and ecological interactionsJR Thompson, HE Rivera, CJ Closek, M Medina
Frontiers in cellular and infection microbiology 4, 176
2015
Metagenomics of the Coral HolobiontM Medina, S Sunagawa
Encyclopedia of Metagenomics, 354-358
2015
Comparative analysis of early ontogeny in Bursatella leachii and Aplysia californicaZ Vue, BS Kamel, TR Capo, AT Bardales, M Medina
PeerJ 2, e700
2015
Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolataCJ Closek, S Sunagawa, MK DeSalvo, YM Piceno, TZ DeSantis, …
The ISME journal 8 (12), 2411-2422
2015